Detailed information of SNP:
|
SNP ID:
sf1009108806(Gbrowse)
Chromosome: chr10 Position: 9108806 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 55.50% | 44.50% |
| All Indica | 799 | 85.61% | 14.39% |
| All Japonica | 496 | 3.83% | 96.17% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009108806 | A->T | INTERGENIC | None |