Detailed information of SNP:
|
SNP ID:
sf1009109201(Gbrowse)
Chromosome: chr10 Position: 9109201 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 96.30% | 3.70% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 403 | 88.09% | 11.91% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 261 | 81.99% | 18.01% |
| Tropical Japonica | 91 | 100.00% | 0.00% |
| Japonica Intermediate | 51 | 98.04% | 1.96% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009109201 | C->T | INTERGENIC | None |