Detailed information of SNP:
|
SNP ID:
sf1009118009(Gbrowse)
Chromosome: chr10 Position: 9118009 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 71.42% | 28.58% |
| All Indica | 798 | 55.89% | 44.11% |
| All Japonica | 496 | 93.15% | 6.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 34.76% | 65.24% |
| Indica II | 213 | 79.81% | 20.19% |
| Indica Intermediate | 211 | 69.19% | 30.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 72.04% | 27.96% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009118009 | T->C | LOC_Os10g18099(LOC_Os10g18099.1) | INTRON |