Detailed information of SNP:
|
SNP ID:
sf1009144824(Gbrowse)
Chromosome: chr10 Position: 9144824 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 84.17% | 15.83% |
| All Indica | 797 | 97.74% | 2.26% |
| All Japonica | 496 | 73.99% | 26.01% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 97.14% | 2.86% |
| Temperate Japonica | 335 | 73.43% | 26.57% |
| Tropical Japonica | 93 | 65.59% | 34.41% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009144824 | T->C | INTERGENIC | None |