Detailed information of SNP:
|
SNP ID:
sf1009181582(Gbrowse)
Chromosome: chr10 Position: 9181582 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 82.37% | 17.63% |
| All Indica | 760 | 70.39% | 29.61% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 78.77% | 21.23% |
| Indica II | 202 | 62.38% | 37.62% |
| Indica Intermediate | 200 | 63.50% | 36.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009181582 | A->T | LOC_Os10g18210(LOC_Os10g18210.1) | Non-Synonymous SNP |