Detailed information of SNP:
|
SNP ID:
sf1009182240(Gbrowse)
Chromosome: chr10 Position: 9182240 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1313 | 64.74% | 35.26% |
| All Indica | 710 | 55.49% | 44.51% |
| All Japonica | 489 | 86.91% | 13.09% |
| Aus | 62 | 14.52% | 85.48% |
| Indica I | 350 | 73.43% | 26.57% |
| Indica II | 178 | 30.34% | 69.66% |
| Indica Intermediate | 182 | 45.60% | 54.40% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 86 | 50.00% | 50.00% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 57.89% | 42.11% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009182240 | A->G | LOC_Os10g18210(LOC_Os10g18210.1) | Synonymous |