Detailed information of SNP:
|
SNP ID:
sf1009191605(Gbrowse)
Chromosome: chr10 Position: 9191605 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1365 | 58.75% | 41.25% |
| All Indica | 780 | 47.05% | 52.95% |
| All Japonica | 495 | 82.83% | 17.17% |
| Aus | 39 | 10.26% | 89.74% |
| Indica I | 369 | 67.48% | 32.52% |
| Indica II | 207 | 23.19% | 76.81% |
| Indica Intermediate | 204 | 34.31% | 65.69% |
| Temperate Japonica | 335 | 94.93% | 5.07% |
| Tropical Japonica | 93 | 45.16% | 54.84% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 39 | 53.85% | 46.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009191605 | G->A | LOC_Os10g18234(LOC_Os10g18234.1) | Synonymous |