Detailed information of SNP:
|
SNP ID:
sf1009191722(Gbrowse)
Chromosome: chr10 Position: 9191722 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 94.91% | 5.09% |
| All Indica | 774 | 90.83% | 9.17% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 357 | 85.43% | 14.57% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009191722 | G->A | LOC_Os10g18234(LOC_Os10g18234.1) | Synonymous |