Detailed information of SNP:
SNP ID:
sf1009205524(Gbrowse)
Chromosome: chr10 Position: 9205524 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1419 | 90.49% | 9.51% |
All Indica | 799 | 97.87% | 2.13% |
All Japonica | 497 | 93.76% | 6.24% |
Aus | 67 | 1.49% | 98.51% |
Indica I | 375 | 97.60% | 2.40% |
Indica II | 213 | 99.06% | 0.94% |
Indica Intermediate | 211 | 97.16% | 2.84% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 72.34% | 27.66% |
Japonica Intermediate | 68 | 92.65% | 7.35% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1009205524 | C->T | INTERGENIC | None |