Detailed information of SNP:
|
SNP ID:
sf1009212320(Gbrowse)
Chromosome: chr10 Position: 9212320 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 60.89% | 39.11% |
| All Indica | 796 | 57.16% | 42.84% |
| All Japonica | 497 | 65.79% | 34.21% |
| Aus | 66 | 60.61% | 39.39% |
| Indica I | 374 | 67.11% | 32.89% |
| Indica II | 212 | 47.17% | 52.83% |
| Indica Intermediate | 210 | 49.52% | 50.48% |
| Temperate Japonica | 335 | 63.58% | 36.42% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009212320 | T->C | INTERGENIC | None |