Detailed information of SNP:
|
SNP ID:
sf1009219537(Gbrowse)
Chromosome: chr10 Position: 9219537 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 62.13% | 37.87% |
| All Indica | 799 | 44.06% | 55.94% |
| All Japonica | 497 | 84.51% | 15.49% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 33.87% | 66.13% |
| Indica II | 213 | 54.46% | 45.54% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 94 | 53.19% | 46.81% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009219537 | A->T | INTERGENIC | None |