Detailed information of SNP:
|
SNP ID:
sf1009240926(Gbrowse)
Chromosome: chr10 Position: 9240926 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 56.38% | 43.62% |
| All Indica | 799 | 56.20% | 43.80% |
| All Japonica | 497 | 64.99% | 35.01% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 66.67% | 33.33% |
| Indica II | 213 | 45.54% | 54.46% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 64.48% | 35.52% |
| Tropical Japonica | 94 | 54.26% | 45.74% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009240926 | T->C | INTERGENIC | None |