Detailed information of SNP:
|
SNP ID:
sf1009245543(Gbrowse)
Chromosome: chr10 Position: 9245543 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 65.30% | 34.70% |
| All Indica | 798 | 44.74% | 55.26% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 33.87% | 66.13% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009245543 | A->T | INTERGENIC | None |