Detailed information of SNP:
|
SNP ID:
sf1009245545(Gbrowse)
Chromosome: chr10 Position: 9245545 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 59.80% | 40.20% |
| All Indica | 798 | 44.74% | 55.26% |
| All Japonica | 497 | 76.26% | 23.74% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 33.87% | 66.13% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 210 | 53.33% | 46.67% |
| Temperate Japonica | 335 | 80.00% | 20.00% |
| Tropical Japonica | 94 | 77.66% | 22.34% |
| Japonica Intermediate | 68 | 55.88% | 44.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009245545 | G->A | INTERGENIC | None |