Detailed information of SNP:
|
SNP ID:
sf1009249251(Gbrowse)
Chromosome: chr10 Position: 9249251 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 76.63% | 23.37% |
| All Indica | 789 | 61.09% | 38.91% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 70.97% | 29.03% |
| Indica II | 209 | 50.72% | 49.28% |
| Indica Intermediate | 208 | 53.85% | 46.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009249251 | C->T | LOC_Os10g18350(LOC_Os10g18350.1) | Non-Synonymous SNP |