Detailed information of SNP:
|
SNP ID:
sf1009249252(Gbrowse)
Chromosome: chr10 Position: 9249252 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 73.64% | 26.36% |
| All Indica | 792 | 60.10% | 39.90% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 70.43% | 29.57% |
| Indica II | 211 | 49.76% | 50.24% |
| Indica Intermediate | 209 | 52.15% | 47.85% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 64.89% | 35.11% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009249252 | G->A | LOC_Os10g18350(LOC_Os10g18350.1) | Synonymous |