Detailed information of SNP:
|
SNP ID:
sf1009250434(Gbrowse)
Chromosome: chr10 Position: 9250434 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 76.61% | 23.39% |
| All Indica | 792 | 60.98% | 39.02% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 71.70% | 28.30% |
| Indica II | 212 | 48.58% | 51.42% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009250434 | G->A | LOC_Os10g18350(LOC_Os10g18350.1) | Non-Synonymous SNP |