Detailed information of SNP:
|
SNP ID:
sf1009255954(Gbrowse)
Chromosome: chr10 Position: 9255954 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 84.32% | 15.68% |
| All Indica | 784 | 95.54% | 4.46% |
| All Japonica | 497 | 63.98% | 36.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 96.75% | 3.25% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 335 | 54.93% | 45.07% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009255954 | T->C | LOC_Os10g18360(LOC_Os10g18360.1) | Synonymous |