Detailed information of SNP:
|
SNP ID:
sf1009256469(Gbrowse)
Chromosome: chr10 Position: 9256469 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 96.05% | 3.95% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009256469 | C->T | LOC_Os10g18360(LOC_Os10g18360.1) | Non-Synonymous SNP |