Detailed information of SNP:
|
SNP ID:
sf1009256589(Gbrowse)
Chromosome: chr10 Position: 9256589 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1392 | 80.03% | 19.97% |
| All Indica | 774 | 66.41% | 33.59% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 76.73% | 23.27% |
| Indica II | 209 | 55.02% | 44.98% |
| Indica Intermediate | 204 | 59.80% | 40.20% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009256589 | G->A | LOC_Os10g18360(LOC_Os10g18360.1) | SNPs that introduce stop codons |