Detailed information of SNP:
|
SNP ID:
sf1009256726(Gbrowse)
Chromosome: chr10 Position: 9256726 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1314 | 87.60% | 12.40% |
| All Indica | 701 | 78.74% | 21.26% |
| All Japonica | 493 | 98.58% | 1.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 347 | 83.86% | 16.14% |
| Indica II | 172 | 73.26% | 26.74% |
| Indica Intermediate | 182 | 74.18% | 25.82% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 92.31% | 7.69% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 82.05% | 17.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009256726 | G->A | LOC_Os10g18360(LOC_Os10g18360.1) | Non-Synonymous SNP |