Detailed information of SNP:
|
SNP ID:
sf1009258484(Gbrowse)
Chromosome: chr10 Position: 9258484 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 90.77% | 9.23% |
| All Indica | 799 | 97.37% | 2.63% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 41.49% | 58.51% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009258484 | C->T | INTERGENIC | None |