Detailed information of SNP:
|
SNP ID:
sf1009268600(Gbrowse)
Chromosome: chr10 Position: 9268600 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 80.42% | 19.58% |
| All Indica | 796 | 85.68% | 14.32% |
| All Japonica | 496 | 86.09% | 13.91% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 212 | 73.58% | 26.42% |
| Indica Intermediate | 211 | 80.57% | 19.43% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 52.69% | 47.31% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009268600 | C->T | INTERGENIC | None |