Detailed information of SNP:
|
SNP ID:
sf1009270178(Gbrowse)
Chromosome: chr10 Position: 9270178 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.41% | 35.59% |
| All Indica | 799 | 84.61% | 15.39% |
| All Japonica | 497 | 43.46% | 56.54% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 71.83% | 28.17% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 42.69% | 57.31% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 41.18% | 58.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009270178 | A->G | INTERGENIC | None |