Detailed information of SNP:
|
SNP ID:
sf1009272753(Gbrowse)
Chromosome: chr10 Position: 9272753 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 98.19% | 1.81% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 463 | 94.60% | 5.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 307 | 93.81% | 6.19% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009272753 | T->C | INTERGENIC | None |