Detailed information of SNP:
|
SNP ID:
sf1009273058(Gbrowse)
Chromosome: chr10 Position: 9273058 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.03% | 25.97% |
| All Indica | 799 | 84.98% | 15.02% |
| All Japonica | 495 | 69.09% | 30.91% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 72.30% | 27.70% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 334 | 74.85% | 25.15% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009273058 | C->T | INTERGENIC | None |