Detailed information of SNP:
SNP ID:
sf1009273158(Gbrowse)
Chromosome: chr10 Position: 9273158 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1418 | 55.85% | 44.15% |
All Indica | 799 | 84.23% | 15.77% |
All Japonica | 497 | 20.12% | 79.88% |
Aus | 67 | 0.00% | 100.00% |
Indica I | 375 | 94.67% | 5.33% |
Indica II | 213 | 70.42% | 29.58% |
Indica Intermediate | 211 | 79.62% | 20.38% |
Temperate Japonica | 335 | 24.18% | 75.82% |
Tropical Japonica | 94 | 15.96% | 84.04% |
Japonica Intermediate | 68 | 5.88% | 94.12% |
Group VI/Aromatic | 14 | 0.00% | 100.00% |
Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf1009273158 | C->T | INTERGENIC | None |