Detailed information of SNP:
|
SNP ID:
sf1009273158(Gbrowse)
Chromosome: chr10 Position: 9273158 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.85% | 44.15% |
| All Indica | 799 | 84.23% | 15.77% |
| All Japonica | 497 | 20.12% | 79.88% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 70.42% | 29.58% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 24.18% | 75.82% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 46.34% | 53.66% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009273158 | C->T | INTERGENIC | None |