Detailed information of SNP:
|
SNP ID:
sf1009275793(Gbrowse)
Chromosome: chr10 Position: 9275793 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 51.68% | 48.32% |
| All Indica | 782 | 17.39% | 82.61% |
| All Japonica | 497 | 97.18% | 2.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 6.47% | 93.53% |
| Indica II | 207 | 30.92% | 69.08% |
| Indica Intermediate | 204 | 23.53% | 76.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009275793 | C->T | LOC_Os10g18390(LOC_Os10g18390.1) | INTRON |