Detailed information of SNP:
|
SNP ID:
sf1009291232(Gbrowse)
Chromosome: chr10 Position: 9291232 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.27% | 9.73% |
| All Indica | 799 | 87.61% | 12.39% |
| All Japonica | 496 | 92.94% | 7.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 73.71% | 26.29% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009291232 | C->A | LOC_Os10g18410(LOC_Os10g18410.1) | Non-Synonymous SNP |