Detailed information of SNP:



SNP ID: sf1009291788(Gbrowse)

Chromosome: chr10

Position: 9291788
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1417 97.67% 2.33%
All Indica797 96.24% 3.76%
All Japonica497 99.80% 0.20%
Aus67 100.00% 0.00%
Indica I374 98.93% 1.07%
Indica II213 91.08% 8.92%
Indica Intermediate210 96.67% 3.33%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1009291788 C->T INTERGENIC None