Detailed information of SNP:
|
SNP ID:
sf1009300107(Gbrowse)
Chromosome: chr10 Position: 9300107 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 86.23% | 13.77% |
| All Indica | 797 | 86.95% | 13.05% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 212 | 71.70% | 28.30% |
| Indica Intermediate | 211 | 82.94% | 17.06% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 94 | 82.98% | 17.02% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009300107 | G->A | LOC_Os10g18440(LOC_Os10g18440.1) | INTRON |