Detailed information of SNP:
|
SNP ID:
sf1009324850(Gbrowse)
Chromosome: chr10 Position: 9324850 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 71.56% | 28.44% |
| All Indica | 799 | 58.82% | 41.18% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 69.33% | 30.67% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 211 | 51.18% | 48.82% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009324850 | G->T | INTERGENIC | None |