Detailed information of SNP:
|
SNP ID:
sf1009330346(Gbrowse)
Chromosome: chr10 Position: 9330346 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 51.55% | 48.45% |
| All Indica | 797 | 39.77% | 60.23% |
| All Japonica | 497 | 78.27% | 21.73% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 28.61% | 71.39% |
| Indica II | 212 | 50.94% | 49.06% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 93.43% | 6.57% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009330346 | A->C | INTERGENIC | None |