Detailed information of SNP:
|
SNP ID:
sf1009332646(Gbrowse)
Chromosome: chr10 Position: 9332646 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 68.80% | 31.20% |
| All Indica | 798 | 56.39% | 43.61% |
| All Japonica | 486 | 97.74% | 2.26% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 35.73% | 64.27% |
| Indica II | 213 | 80.28% | 19.72% |
| Indica Intermediate | 210 | 69.05% | 30.95% |
| Temperate Japonica | 325 | 98.46% | 1.54% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009332646 | C->T | LOC_Os10g18540(LOC_Os10g18540.1) | INTRON |