Detailed information of SNP:
|
SNP ID:
sf1009336415(Gbrowse)
Chromosome: chr10 Position: 9336415 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 53.29% | 46.71% |
| All Indica | 795 | 45.91% | 54.09% |
| All Japonica | 495 | 63.64% | 36.36% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 373 | 35.39% | 64.61% |
| Indica II | 213 | 55.40% | 44.60% |
| Indica Intermediate | 209 | 55.02% | 44.98% |
| Temperate Japonica | 334 | 67.66% | 32.34% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009336415 | G->A | INTERGENIC | None |