Detailed information of SNP:
|
SNP ID:
sf1009340211(Gbrowse)
Chromosome: chr10 Position: 9340211 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 76.70% | 23.30% |
| All Indica | 791 | 61.31% | 38.69% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 71.51% | 28.49% |
| Indica II | 208 | 52.88% | 47.12% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009340211 | A->T | INTERGENIC | None |