Detailed information of SNP:
|
SNP ID:
sf1009340884(Gbrowse)
Chromosome: chr10 Position: 9340884 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 57.11% | 42.89% |
| All Indica | 795 | 45.03% | 54.97% |
| All Japonica | 497 | 84.91% | 15.09% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 372 | 34.41% | 65.59% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 210 | 52.38% | 47.62% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 94 | 52.13% | 47.87% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009340884 | C->A | INTERGENIC | None |