Detailed information of SNP:
|
SNP ID:
sf1009342608(Gbrowse)
Chromosome: chr10 Position: 9342608 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1341 | 64.35% | 35.65% |
| All Indica | 732 | 49.45% | 50.55% |
| All Japonica | 489 | 86.91% | 13.09% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 335 | 39.40% | 60.60% |
| Indica II | 200 | 60.00% | 40.00% |
| Indica Intermediate | 197 | 55.84% | 44.16% |
| Temperate Japonica | 332 | 97.59% | 2.41% |
| Tropical Japonica | 90 | 54.44% | 45.56% |
| Japonica Intermediate | 67 | 77.61% | 22.39% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009342608 | A->G | LOC_Os10g18560(LOC_Os10g18560.1) | Non-Synonymous SNP |