Detailed information of SNP:
|
SNP ID:
sf1009343247(Gbrowse)
Chromosome: chr10 Position: 9343247 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 65.97% | 34.03% |
| All Indica | 765 | 54.51% | 45.49% |
| All Japonica | 494 | 85.22% | 14.78% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 349 | 45.56% | 54.44% |
| Indica II | 208 | 61.54% | 38.46% |
| Indica Intermediate | 208 | 62.50% | 37.50% |
| Temperate Japonica | 335 | 96.72% | 3.28% |
| Tropical Japonica | 91 | 52.75% | 47.25% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009343247 | G->A | LOC_Os10g18560(LOC_Os10g18560.1) | INTRON |