Detailed information of SNP:
|
SNP ID:
sf1009344167(Gbrowse)
Chromosome: chr10 Position: 9344167 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 63.89% | 36.11% |
| All Indica | 759 | 49.93% | 50.07% |
| All Japonica | 495 | 84.85% | 15.15% |
| Aus | 58 | 70.69% | 29.31% |
| Indica I | 350 | 42.29% | 57.71% |
| Indica II | 211 | 56.87% | 43.13% |
| Indica Intermediate | 198 | 56.06% | 43.94% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 49.46% | 50.54% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009344167 | G->A | LOC_Os10g18560(LOC_Os10g18560.1) | Non-Synonymous SNP |