Detailed information of SNP:
|
SNP ID:
sf1009378925(Gbrowse)
Chromosome: chr10 Position: 9378925 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1391 | 80.66% | 19.34% |
| All Indica | 773 | 68.43% | 31.57% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 364 | 78.02% | 21.98% |
| Indica II | 207 | 56.52% | 43.48% |
| Indica Intermediate | 202 | 63.37% | 36.63% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009378925 | C->T | LOC_Os10g18630(LOC_Os10g18630.1) | SNPs that introduce stop codons |