Detailed information of SNP:
|
SNP ID:
sf1009379584(Gbrowse)
Chromosome: chr10 Position: 9379584 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 59.94% | 40.06% |
| All Indica | 785 | 43.95% | 56.05% |
| All Japonica | 495 | 85.25% | 14.75% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 31.47% | 68.53% |
| Indica II | 206 | 57.77% | 42.23% |
| Indica Intermediate | 204 | 52.94% | 47.06% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 94 | 50.00% | 50.00% |
| Japonica Intermediate | 67 | 74.63% | 25.37% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009379584 | A->T | INTERGENIC | None |