Detailed information of SNP:
|
SNP ID:
sf1009379882(Gbrowse)
Chromosome: chr10 Position: 9379882 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 60.30% | 39.70% |
| All Indica | 785 | 51.97% | 48.03% |
| All Japonica | 496 | 82.66% | 17.34% |
| Aus | 66 | 3.03% | 96.97% |
| Indica I | 373 | 35.66% | 64.34% |
| Indica II | 206 | 69.90% | 30.10% |
| Indica Intermediate | 206 | 63.59% | 36.41% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 93 | 34.41% | 65.59% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009379882 | T->C | INTERGENIC | None |