Detailed information of SNP:
|
SNP ID:
sf1009380714(Gbrowse)
Chromosome: chr10 Position: 9380714 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 78.89% | 21.11% |
| All Indica | 791 | 90.77% | 9.23% |
| All Japonica | 493 | 56.59% | 43.41% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 91.89% | 8.11% |
| Indica II | 211 | 91.00% | 9.00% |
| Indica Intermediate | 210 | 88.57% | 11.43% |
| Temperate Japonica | 334 | 54.19% | 45.81% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009380714 | G->A | LOC_Os10g18640(LOC_Os10g18640.1) | Synonymous |