Detailed information of SNP:
|
SNP ID:
sf1009393258(Gbrowse)
Chromosome: chr10 Position: 9393258 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 83.74% | 16.26% |
| All Indica | 794 | 93.58% | 6.42% |
| All Japonica | 492 | 65.45% | 34.55% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 93.53% | 6.47% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 93.33% | 6.67% |
| Temperate Japonica | 331 | 57.70% | 42.30% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009393258 | T->C | LOC_Os10g18660(LOC_Os10g18660.1) | INTRON |