Detailed information of SNP:
|
SNP ID:
sf1009395745(Gbrowse)
Chromosome: chr10 Position: 9395745 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 68.08% | 31.92% |
| All Indica | 798 | 54.89% | 45.11% |
| All Japonica | 495 | 98.38% | 1.62% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 375 | 33.60% | 66.40% |
| Indica II | 212 | 78.77% | 21.23% |
| Indica Intermediate | 211 | 68.72% | 31.28% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009395745 | C->T | LOC_Os10g18660(LOC_Os10g18660.1) | INTRON |