Detailed information of SNP:
|
SNP ID:
sf1009400698(Gbrowse)
Chromosome: chr10 Position: 9400698 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 56.25% | 43.75% |
| All Indica | 783 | 52.87% | 47.13% |
| All Japonica | 486 | 54.94% | 45.06% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 66.04% | 33.96% |
| Indica II | 208 | 38.46% | 61.54% |
| Indica Intermediate | 204 | 43.63% | 56.37% |
| Temperate Japonica | 330 | 48.18% | 51.82% |
| Tropical Japonica | 89 | 84.27% | 15.73% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009400698 | T->C | INTERGENIC | None |