Detailed information of SNP:
|
SNP ID:
sf1009402107(Gbrowse)
Chromosome: chr10 Position: 9402107 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1392 | 66.45% | 33.55% |
| All Indica | 787 | 94.66% | 5.34% |
| All Japonica | 482 | 14.32% | 85.68% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 204 | 92.65% | 7.35% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 326 | 1.53% | 98.47% |
| Tropical Japonica | 92 | 54.35% | 45.65% |
| Japonica Intermediate | 64 | 21.88% | 78.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009402107 | T->C | INTERGENIC | None |