Detailed information of SNP:
|
SNP ID:
sf1009403932(Gbrowse)
Chromosome: chr10 Position: 9403932 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 61.51% | 38.49% |
| All Indica | 792 | 50.00% | 50.00% |
| All Japonica | 489 | 89.98% | 10.02% |
| Aus | 67 | 1.49% | 98.51% |
| Indica I | 372 | 29.57% | 70.43% |
| Indica II | 213 | 74.18% | 25.82% |
| Indica Intermediate | 207 | 61.84% | 38.16% |
| Temperate Japonica | 332 | 97.89% | 2.11% |
| Tropical Japonica | 93 | 61.29% | 38.71% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009403932 | C->T | INTERGENIC | None |