Detailed information of SNP:
|
SNP ID:
sf1009427562(Gbrowse)
Chromosome: chr10 Position: 9427562 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 71.56% | 28.44% |
| All Indica | 793 | 98.11% | 1.89% |
| All Japonica | 488 | 23.77% | 76.23% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 210 | 97.14% | 2.86% |
| Indica Intermediate | 208 | 97.12% | 2.88% |
| Temperate Japonica | 330 | 11.82% | 88.18% |
| Tropical Japonica | 92 | 56.52% | 43.48% |
| Japonica Intermediate | 66 | 37.88% | 62.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1009427562 | C->T | INTERGENIC | None |